ESR 6:Mesenchymal stromal cells as key orchestrators in RA.

PhD research


Dr Lisa van Baarsen

PI | Associate Professor | PhD

Amsterdam Rheumatology and immunology Center (ARC)

Rheumatology & Clinical Immunology

Experimental Immunology

Location AMC | K0-105 | Meibergdreef 9 1105 AZ Amsterdam

T: +31205668043  |  E: This email address is being protected from spambots. You need JavaScript enabled to view it.

Duration: 48 months


Mesenchymal stromal cells (MSC) not only provide structure to tissues but control immune cell activation in an organ-specific manner. The regulatory and cell intrinsic networks controlling this organ-dependent MSC function are unclear. These organ-specific MSC capacities may be exploited for therapeutic purposes for example in rheumatoid arthritis (RA). Synovial tissue MSC of RA patients are characterized by their proinflammatory proliferative phenotype and epigenetic modifications, while bone marrow MSC of RA patients display a reduced capacity to support haematopoiesis. However, the exact mechanism of these organ-specific MSC defects is not clear and it is unknown whether this MSC defect is induced by inflammation, or should be considered as a primary event occurring in a pre-clinical stage.

We propose that MSC in lymphoid organs and synovial tissue are defective before onset of RA and a key driver in the development of RA. Because of their crucial function in regulating immune responses, we postulate that such malfunctioning MSC create a tissue-specific microenvironment in which immune cells are not properly controlled leading to the development of RA. To study this we have access to a unique cohort of prospectively followed RA-autoantibody positive individuals at risk of developing RA from who synovial, lymph node and bone marrow samples are collected. Preliminary data obtained in our research group by studying synovial and lymph node biopsies of these RA-risk individuals suggest stromal cell activation before onset of disease, supporting our hypothesis.


Key objectives are: 1. Phenotyping and comparing tissue-specific MSC during health and disease, starting from a discovery-based genomics approach; 2. Investigating whether tissue-specific MSC-mediated effects on immune cell activation are altered before onset of RA, by performing co-culture experiments of MSC with immune cells; 3. MSC modulation as a tool to normalize altered immune responses observed in RA(risk).

Our research team

It is our ambition to unravel the molecular and biological processes leading to systemic autoimmune diseases by studying unique human lymphoid and synovial tissue biopsies obtained during the pre-clinical and earliest phases of rheumatoid arthritis. These studies will lay the foundation for the development of novel therapies to prevent and treat this chronic disabling immune-mediated autoimmune disease.

Working within the recently established Amsterdam Rheumatology and immunology Center (ARC) and being embedded within the Amsterdam Infection & Immunity Institute (AI&II) gives us the excellent opportunity to work closely together with both rheumatologists as well as immunologists on translational research projects. Collaboration with several rheumatologists within the ARC enables the use of unique biomaterials from patients with different stages and types of autoimmune diseases. For our research program lymph node biopsy procedures are performed in close collaboration with the department of Radiology, while synovial tissue biopsies are routinely collected within our department. Bone marrow biopsy procedure will be performed in collaboration with haematologist Dr. Hazeberg of the Department of Haematology. We have a close collaboration with Prof.dr. Mebius (VUMC) who has a strong track record in lymph node immunobiology using sophisticated in vivo lymph node transplantation models. We are involved in several national and international research projects, allowing excellent possibilities for collaborations with other research groups in academia as well as industry. 

This multidisciplinary research environment empowers state-of-the-art immunological studies during various stages of autoimmunity as well as the translation of our findings into novel therapeutic approaches. The vanBaarsen group currently consists of 5 PhD students (2 at VUMC), 1 postdoc (at VUMC) and 2 research technicians. This project will be performed in close collaboration with ARCAID PI’s Prof.dr. Antoine van Kampen and Prof. dr. Reina Mebius.

Your profile

We are looking for a highly motivated and enthusiastic researcher with:

  • - A master degree Biomedical Sciences, with affinity for Immunology and translational research;
  • - Experience with cellular responses, molecular biology, and preferably affinity with bioinformatics;
  • - You have a flexible, pro-active team spirit but you can also work independently;
  • - You like to show initiative and you have talent for focus and organization
  • - You have excellent communications skills in English, both written and verbal.

Our offer

All ARCAID ESRs receive a full employment contract for 4 years, according to the Collective Employment Agreement (CAO) of the Dutch University Medical Centres. The monthly salary based on a 36-hour work starts from €2.422,- with yearly increments to a maximum of € 3.103,-. This 4-year PhD position is funded by the  Marie Skłodowska-Curie actions of the European Union's Horizon 2020 COFUND program under grant agreement No 847551. There is no separate budget available for mobility as it is already included in the ESR salary. ESRs may attend external courses, conferences or workshops. If applicable or required, additional expenses for training and conference participation and the travel to a Partner Organisation will be covered by the project. The ESR salary meets the requirements of the Dutch Immigration Department to allow family members to move to the Netherlands. It is at the convenience of the ESR to decide on this family movement since the Amsterdam UMC will not cover additional expenses regarding mobility of spouse nor for the required accompanying residence permits. In addition to their individual scientific projects, all fellows will have the opportunity to attend international progress meetings, scientific conferences and summer schools. Additionally, they benefit from further continuing education, which includes internships and secondments, a variety of training modules as well as transferable skills courses. See recruitment procedure.

Your application

See recruitment procedure. You can apply using the online application form. For more information about the project you can contact Dr Lisa van Baarsen (This email address is being protected from spambots. You need JavaScript enabled to view it.) , telephone: +31205668043.